Merabet N., Lucassen P., Crielaard L., Stronks K., Quax R., Sloot P., La Fleur S., Nicolaou M. How exposure to chronic stress contributes to the development of type 2 diabetes: A complexity science approach. Frontiers in Neuroendocrinology. 2022. Vol. 65. pp. 100972.
Melnikov V.R., Christopoulos G., Krzhizhanovskaya V.V., Lees M.H., Sloot P. Behavioural thermal regulation explains pedestrian path choices in hot urban environments. Scientific Reports. 2022. Vol. 12. No. 1. pp. 2441.
Karbovskii V., Lees M.H., Presbitero A., Kurilkin A., Voloshin D., Derevitskii I., Karsakov A., Sloot P. Ensemble learning for large-scale crowd flow prediction. Engineering Applications of Artificial Intelligence. 2021. Vol. 106. pp. 104469.
Van Der Wal J., Van Borkulo C., Deserno M., Breedvelt J., Lees M., Lokman J., Borsboom D., Denys D., Van Holst R., Smidt M., Stronks K., Lucassen P., Van Weert J., Sloot P., Bockting C., Wiers R. Advancing urban mental health research: from complexity science to actionable targets for intervention. Lancet Psychiatry. 2021. Vol. 8. No. 11. pp. 991-1000.
Dutta P., Quax R., Crielaard L., Badiali L., Sloot P. Inferring temporal dynamics from cross-sectional data using Langevin dynamics. Royal Society Open Science. 2021. Vol. 8. No. 11. pp. 211374.
Kovalchuk S.V., Krzhizhanovskaya V.V. ., Paszynski M., Zavodszky G., Lees M.H., Dongarra J., Sloot P. 20 years of computational science: Selected papers from 2020 International Conference on Computational Science. Journal of Computational Science. 2021. Vol. 53. pp. 101395.
Presbitero A., Melnikov V.R., Krzhizhanovskaya V.V. ., Sloot P. A unifying model to estimate the effect of heat stress in the human innate immunity during physical activities. Scientific Reports. 2021. Vol. 11. No. 1. pp. 16688.
Mattsson E.S., Takes F.W., Heemskerk E.M., Diks C., Buiten G., Faber A., Sloot P. Functional Structure in Production Networks. Frontiers in Big Data. 2021. Vol. 4. pp. 666712.
Kovalchuk S.V., Krzhizhanovskaya V.V., Sloot P. 20 years of computational Science. Journal of Computational Science. 2020. Vol. 46. pp. 101187.
Sheraton M.V., Chiew G., Melnikov V.R., Tan E., Luo K., Verma N.K., Sloot P. Emergence of spatio-temporal variations in chemotherapeutic drug efficacy: in-vitro and in-Silico 3D tumour spheroid studies. BMC Cancer. 2020. Vol. 20. No. 1. pp. 1201.
Melnikov V.R., Krzhizhanovskaya V.V., Lees M.H., Sloot P. The impact of pace of life on pedestrian heat stress: A computational modelling approach. Environmental Research. 2020. Vol. 186. pp. 109397.
Severiukhina O., Kesarev S.A., Bochenina K.O., Boukhanovsky A.V., Lees M.H., Sloot P. Large-scale forecasting of information spreading. Journal of Big Data. 2020. Vol. 7. No. 1. pp. 72.
Har-Shemesh O., Quax R., Lansing J., Sloot P. Questionnaire data analysis using information geometry. Scientific Reports. 2020. Vol. 10. No. 1. pp. 8633.
Presbitero A., Quax R., Krzhizhanovskaya V.V., Sloot P. Detecting critical transitions in the human innate immune system post-cardiac surgery. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2020. Vol. 12137 LNCS. pp. 371-384.
Cardoso P.J., Rodrigues J.M., Monteiro J., Lam R., Krzhizhanovskaya V.V., Lees M.H., Dongarra J., Sloot P. Computational Science in the Interconnected World: Selected papers from 2019 International Conference on Computational Science. Journal of Computational Science. 2020. Vol. 47. pp. 101222.
Tan C.H., Oh H.S., Sheraton V., Mancini E., Joachim Loo S., Kjelleberg S., Sloot P., Rice S.A. Convection and the Extracellular Matrix Dictate Inter- and Intra-Biofilm Quorum Sensing Communication in Environmental Systems. Environmental science & technology. 2020. Vol. 54. No. 11. pp. 6730-6740.
Sheraton M.V., Melnikov V.R., Sloot P. Prediction and quantification of bacterial biofilm detachment using Glazier-Graner-Hogeweg method based model simulations. Journal of Theoretical Biology. 2019. Vol. 482. pp. 109994.
Huang Z., Lum E., Jimenez G., Semwal M., Sloot P., Car J. Medication management support in diabetes: a systematic assessment of diabetes self-management apps. BMC Medicine. 2019. Vol. 17. pp. 127.
Kovalchuk S.V., Krzhizhanovskaya V.V. ., Shi Y., Fu H., Lees M.H., Dongarra J., Sloot P. Science at the Intersection of Data, Modelling, and Computation. Journal of Computational Science. 2019. Vol. 34. pp. 117-119.
Huang Z., Tan E., Lum E., Sloot P.M., Boehm B., Car J. A smartphone app to improve medication adherence in patients with type 2 diabetes in Asia: Feasibility randomized controlled trial. Journal of Medical Internet Research. 2019. Vol. 7. No. 9. pp. e14914.
Melnikov V.R., Krzhizhanovskaya V.V., Lees M.H., Sloot P. System dynamics of human body thermal regulation in outdoor environments. Building and Environment. 2018. Vol. 143. pp. 760-769.
Roy D., Palavalli B., Menon N., King R., Pfeffer K., Lees M., Sloot P. Survey-based socio-economic data from slums in Bangalore, India. Scientific Data. 2018. Vol. 5. pp. 170200.
Mancini E., Quax R., De Luca A., Fidler S., Stohr W., Sloot P. A study on the dynamics of temporary HIV treatment to assess the controversial outcomes of clinical trials: An in-silico approach. PLoS ONE. 2018. Vol. 13. No. 7. pp. e0200892.
Roy D., Lees M.H., Pfeffer K., Sloot P. Spatial segregation, inequality, and opportunity bias in the slums of Bengaluru. Cities. 2018. Vol. 74. pp. 269-276.
Presbitero A., Mancini E., Brands R., Krzhizhanovskaya V.V. ., Sloot P. Supplemented Alkaline Phosphatase Supports the Immune Response in Patients Undergoing Cardiac Surgery: Clinical and Computational Evidence. Frontiers in Immunology. 2018. Vol. 9. pp. 2342.
Kovalchuk S.V., Krzhizhanovskaya V.V., Koumoutsakos P., Chatzi E., Lees M.H., Dongarra J., Sloot P.M. The Art of Computational Science: Bridging Gaps – Forming Alloys. Journal of Computational Science. 2018. Vol. 26. pp. 190-192.
Sheraton M.V., Sloot P. Parallel performance analysis of bacterial biofilm simulation models. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2018. Vol. 10860. pp. 496-505.
Sheraton M.V., Yam J.K., Tan C.H., Oh H.S., Mancini E., Yang L., Rice S.A., Sloot P. Mesoscopic energy minimization drives pseudomonas aeruginosa biofilm morphologies and consequent stratification of antibiotic activity based on cell metabolism. Antimicrobial Agents and Chemotherapy. 2018. Vol. 62. No. 5. pp. e02544.
Quax R., Chliamovitch G., Dupuis A., Falcone J., Chopard B., Hoekstra A.G., Sloot P. Information processing features can detect behavioral regimes of dynamical systems. Complexity. 2018. pp. 6047846.
Sienkiewicz J., Soja K., Holyst J.A., Sloot P. Categorical and Geographical Separation in Science. Scientific Reports. 2018. Vol. 8. pp. 8523.
Tan J.S., Zavodszky G., Sloot P. Understanding malaria induced red blood cell deformation using data-driven lattice boltzmann simulations. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2018. Vol. 10860. pp. 392-403.
Quax R., Har-Shemesh O., Sloot P. Quantifying Synergistic Information Using Intermediate Stochastic Variables. Entropy. 2017. Vol. 19. No. 2. pp. 85.
Viswanathan V., Lees M.H., Sloot P. Erratum to: The influence of memory on indoor environment exploration: A numerical study. Behavior research methods. 2017. Vol. 49. No. 4. pp. 1569.
Koumoutsakos P., Chatzi E., Krzhizhanovskaya V.V., Lees M.H., Dongarra J., Sloot P. The Art of Computational Science, Bridging Gaps - Forming Alloys. Preface for ICCS 2017. Procedia Computer Science. 2017. Vol. 108. pp. 1-2.
Анализ и моделирование темпоральных комплексных сетей
Melnikov V.R., Krzhizhanovskaya V.V., Sloot P. Models of Pedestrian Adaptive Behaviour in Hot Outdoor Public Spaces. Procedia Computer Science. 2017. Vol. 108. pp. 185-194.
Presbitero A., Quax R., Krzhizhanovskaya V.V. ., Sloot P. Anomaly Detection in Clinical Data of Patients Undergoing Heart Surgery. Procedia Computer Science. 2017. Vol. 108. pp. 99-108.
Анализ и моделирование темпоральных комплексных сетей
Нечаев Ю.И., Слоот П. Модели экстренных вычислений при контроле транспортных и социальных катастроф на основе нейродинамических систем и формализма комплексных сетей. Нейрокомпьютеры: разработка, применение. 2017. № 2. С. 12-23.
Car J., Tan W., Huang Z., Sloot P., Franklin B.D. eHealth in the future of medications management: Personalisation, monitoring and adherence. BMC Medicine. 2017. Vol. 15. pp. 73.
Roy D., Lees M.H., Pfeffer K., Sloot P. Modelling the impact of household life cycle on slums in Bangalore. Computers, Environment and Urban Systems. 2017. Vol. 64. pp. 275-287.
Traag V.A., Quax R., Sloot P. Modelling the distance impedance of protest attendance. Physica A: Statistical Mechanics and its Applications. 2017. Vol. 468. pp. 171-182.
De Graaf C.S., Kandhai D., Sloot P. Efficient estimation of sensitivities for counterparty credit risk with the finite difference Monte Carlo method. Journal of Computational Finance. 2017. Vol. 21. No. 1. pp. 83-113.
Klimova A., Bilyatdinova A., Kortelainen J., Sloot P., Boukhanovsky A.V. Where Youth strives in Computational Science: retrospective Analysis of Young Scientist Conference in HPC and Simulation. Procedia Computer Science. 2017. Vol. 119. pp. 1-7.
Kovalchuk S.V., Abuhay T.M., Altintas I., Norman M., Lees M.H., Krzhizhanovskaya V.V., Dongarra J., Sloot P. Data through the Computational Lens. Journal of Computational Science. 2017. Vol. 20. pp. 81-84.
Har-Shemesh O., Quax R., Minano B., Hoekstra A.G., Sloot P. Nonparametric estimation of Fisher information from real data. Physical Review E. 2016. Vol. 93. No. 2. pp. 023301.
Har-Shemesh O., Quax R., Hoekstra A.G., Sloot P. Information geometric analysis of phase transitions in complex patterns: The case of the Gray-Scott reaction-diffusion model. Journal of Statistical Mechanics: Theory and Experiment. 2016. Vol. 2016. No. 4. pp. 043301.
Altintas I., Norman M., Lees M.H., Krzhizhanovskaya V.V. ., Dongarra J., Sloot P. Data through the Computational Lens, Preface for ICCS 2016. Procedia Computer Science. 2016. Vol. 80. pp. 1-7.
Viswanathan V., Lees M., Sloot P. The influence of memory on indoor environment exploration: A numerical study. Behavior research methods. 2016. Vol. 48. No. 2. pp. 621-639.
Presbitero A., Krzhizhanovskaya V.V. ., Mancini E., Brands R., Sloot P. Immune System Model Calibration by Genetic Algorithm. Procedia Computer Science. 2016. Vol. 101. pp. 161–171.
Presbitero A., Krzhizhanovskaya V.V. ., Mancini E., Brands R., Sloot P. Reproducibility of Two Innate Immune System Models. Communications in Computer and Information Science. 2016. Vol. 674. pp. 501-514.
Слоот П., Холыст Я., Кампис Ж., Лис М., Митягин С.А., Иванов С.В., Боченина К.О., Гулева В.Ю., Мухина К.Д., Насонов Д.А., Бутаков Н.А., Леоненко В.Н., Ланцева А.А., Бухановский А.В. Суперкомпьютерное моделирование критических явлений в сложных социальных системах. Научно-технический вестник информационных технологий, механики и оптики [Scientific and Technical Journal of Information Technologies, Mechanics and Optics]. 2016. Т. 16. № 6(106). С. 967-995.
Гулева В.Ю., Амуда А., Боченина К.О., Слоот П. Влияние топологической структуры на динамику темпоральной сети. Научно-технический вестник информационных технологий, механики и оптики [Scientific and Technical Journal of Information Technologies, Mechanics and Optics]. 2016. Т. 16. № 6(106). С. 1141–1144.
Mei S., Chen B., Zhu Y., Lees M.H., Boukhanovsky A.V., Sloot P. Simulating city-level airborne infectious diseases. Computers, Environment and Urban Systems. 2015. Vol. 51. pp. 97-105.
Javaheri N., Dries R., Burson A., Stal L.J., Sloot P.M., Kaandorp J.A. Temperature affects the silicate morphology in a diatom. Scientific Reports. 2015. Vol. 5. pp. 11652.
Krzhizhanovskaya V.V., Dukhanov A.V., Bilyatdinova A.Z., Boukhanovsky A.V., Sloot P. Russian-Dutch double-degree master’s programme in computational science in the age of global education. Journal of Computational Science. 2015. Vol. 10. pp. 288-298.
Pyayt A.L., Shevchenko D.V., Kozionov A.P., Mokhov I.I., Lang B., Krzhizhanovskaya V.V. ., Sloot P. Combining Data-driven Methods with Finite Element Analysis for Flood Early Warning Systems. Procedia Computer Science. 2015. Vol. 51. pp. 2347-2356.
Duijn P., Sloot P. From data to disruption. Digital Investigation. 2015. Vol. 15. pp. 39–45.
Merelli E., Rucco M., Sloot P., Tesei L. Topological characterization of complex systems: Using Persistent Entropy. Entropy. 2015. Vol. 17. No. 10. pp. 6872-6892.
Koziel S., Leifsson L., Lees M., Krzhizhanovskaya V.V. ., Dongarra J., Sloot P. Computational Science at the Gates of Nature, Preface for ICCS 2015. Procedia Computer Science. 2015. Vol. 51. pp. 1-8.
Mei S., Zarrabi N., Lees M.H., Sloot P.M. Complex agent networks: An emerging approach for modeling complex systems. Applied Soft Computing. 2015. Vol. 37. pp. 311-321.
Melnikova N.B. ., Jordan D., Krzhizhanovskaya V.V., Sloot P. Numerical prediction of the IJkDijk trial embankment failure. Proceedings of the ICE - Geotechnical Engineering. 2015. Vol. 168. No. 2. pp. 158-171.
Boukhanovsky A.V., Ilyin V.A., Krzhizhanovskaya V.V., Athanassoulis G.A., Klimentov A.A., Sloot P. Young Researchers Advancing Computational Science: Perspectives of the Young Scientists Conference 2015. Procedia Computer Science. 2015. Vol. 66. pp. 1-4.
Melnikov V.R., Krzhizhanovskaya V.V., Boukhanovsky A.V., Sloot P. Data-driven Modeling of Transportation Systems and Traffic Data Analysis During a Major Power Outage in the Netherlands. Procedia Computer Science. 2015. Vol. 66. pp. 336–345.
Dijkstra L.J., Yakushev A.V. ., Duijn P., Boukhanovsky A.V. ., Sloot P.M. Inference of the Russian drug community from one of the largest social networks in the Russian Federation. Quality & Quantity. 2014. Vol. 48. No. 5. pp. 2739-2755.
Erdbrink C.D., Krzhizhanovskaya V.V. ., Sloot P.M. Free-surface flow simulations for discharge-based operation of hydraulic structure gates. Journal of Hydroinformatics. 2014. Vol. 16. No. 1. pp. 189-206.
Arseneva A.Z., Dukhanov A.V., Bochenina K.O., Boukhanovsky A.V., Krzhizhanovskaya V.V., Sloot P. Dutch-Russian Double Degree Master's Program Curricula in Computational Science and High Performance Computing. Proceedings - Frontiers in Education Conference, FIE. 2014. pp. 7044195.
Cheong S., Tan T., Chen С.С., Chang W., Liu Z., Chew L., Sloot P., Johnson N.F. Short-term forecasting of Taiwanese earthquakes using a universal model of fusion-fission processes. Scientific Reports. 2014. Vol. 4. pp. 3624.
Bui Q., Sloot P., Van Mulligen E.M., Kors J.A. A novel feature-based approach to extract drug-drug interactions from biomedical text. Bioinformatics. 2014. Vol. 30. No. 23. pp. 3365-3371.
Dukhanov A.V., Krzhizhanovskaya V.V. ., Bilyatdinova A.Z., Boukhanovsky A.V. ., Sloot P.M. Double-Degree Master's Program in Computational Science: Experiences of ITMO University and University of Amsterdam. Procedia Computer Science. 2014. Vol. 29. pp. 1433-1455.
Roy D., Lees M.H., Palavalli B., Pfeffer K., Sloot P.M. The emergence of slums: A contemporary view on simulation models. Environmental Modelling and Software. 2014. Vol. 59. pp. 76-90.
Pyayt A.L., Kozionov A.P., Kusherbaeva V.T., Mokhov I.I., Krzhizhanovskaya V.V. ., Broekhuijsen B.J., Meijer R.J., Sloot P. Signal analysis and anomaly detection for flood early warning systems. Journal of Hydroinformatics. 2014. Vol. 16. No. 5. pp. 1025–1043.
Viswanathan V., Lee C., Lees M.H., Cheong S., Sloot P.M. Quantitative comparison between crowd models for evacuation planning and evaluation . European Physical Journal B. 2014. Vol. 87. No. 2. pp. 27.
Duan W., Quax R., Lees M.H., Qiu X., Sloot P. Topology dependent epidemic spreading velocity in weighted networks. Journal of Statistical Mechanics: Theory and Experiment. 2014. Vol. 2014. No. 12. pp. P12020.
Mei S., Zhu Y., Qiu X., Zhou X., Zu Z., Boukhanovsky A.V. ., Sloot P.M. Individual Decision Making Can Drive Epidemics: A Fuzzy Cognitive Map Study. IEEE Transactions on Fuzzy Systems. 2014. Vol. 22. No. 2. pp. 264-273.
Erdbrink C.D., Krzhizhanovskaya V.V. ., Sloot P. Reducing Cross-flow Vibrations of Underflow Gates: Experiments and Numerical Studies. Journal of Fluids and Structures. 2014. Vol. 50. pp. 25-48.
Mordvintsev A.S., Krzhizhanovskaya V.V., Lees M.H., Sloot P. Simulation of City Evacuation Coupled to Flood Dynamics. Pedestrian and Evacuation Dynamics 2012. 2014. No. 2. pp. 485-499.
Yakushev A.V. ., Boukhanovsky A.V., Sloot P.M. Topic Crawler for Social Networks Monitoring. Communications in Computer and Information Science. 2013. Vol. 394. pp. 214-227.
Quax R., Kandhai D., Sloot P.M. Information dissipation as an early-warning signal for the Lehman Brothers collapse in financial time series. Scientific Reports. 2013. Vol. 3. pp. 1898.
Alexandrov V., Lees M., Krzhizhanovskaya V.V. ., Dongarra J., Sloot P. Computation at the frontiers of science, preface for ICCS 2013. Procedia Computer Science. 2013. Vol. 18. pp. 1-2.
Krzhizhanovskaya V.V., Melnikova N.B. ., Chirkin A.M. ., Ivanov S.V., Boukhanovsky A.V., Sloot P.M. Distributed simulation of city inundation by coupled surface and subsurface porous flow for urban flood decision support system. Procedia Computer Science. 2013. Vol. 18. pp. 1046-1056.
Quax R., Apolloni A., Sloot P. The diminishing role of hubs in dynamical processes on complex networks. Journal of the Royal Society Interface. 2013. Vol. 10. No. 88. pp. 20130568.
Sloot P.M., Kampis G., Gulyas L. Advances in dynamic temporal networks: Understanding the temporal dynamics of complex adaptive networks. European Physical Journal Special Topics. 2013. Vol. 222. No. 6. pp. 1287-1293.
Zarrabi N., Prosperi M., Belleman R.G., Di Giambenedetto S., Fabbiani M., De Luca A., Sloot P.M. Combining social and genetic networks to study HIV transmission in mixing risk groups. European Physical Journal Special Topics. 2013. Vol. 222. No. 6. pp. 1377-1387.
Czaplicka A., Holyst J.A., Sloot P.M. Noise enhances information transfer in hierarchical networks. Scientific Reports. 2013. Vol. 3. pp. 1223.
Quax R., Van De Vijver D., Frentz D., Sloot P.M. Inferring epidemiological parameters from phylogenetic information for the HIV-1 epidemic among MSM. European Physical Journal Special Topics. 2013. Vol. 222. No. 6. pp. 1347-1358.
Quax R., Apolloni A., Sloot P.M. Towards understanding the behavior of physical systems using information theory. European Physical Journal Special Topics. 2013. Vol. 222. No. 6. pp. 1389-1401.
Toth N., Gulyas L., Legendi R.O., Duijn P., Sloot P., Kampis G. The importance of centralities in dark network value chains. European Physical Journal Special Topics. 2013. Vol. 222. No. 6. pp. 1413-1439.
Melnikova N.B. ., Krzhizhanovskaya V.V., Sloot P. Modeling earthen dikes using real-time sensor data. Journal of Hydrology. 2013. Vol. 496. pp. 154-165.
Zarrabi N., Prosperi M., Belleman R.G., Colafigli M., De Luca A., Sloot P. Combining Epidemiological and Genetic Networks Signifies the Importance of Early Treatment in HIV-1 Transmission. PLoS ONE. 2012. Vol. 7. No. 9. pp. e46156.
Mancini E., Castiglione F., Bernaschi M., De Luca A., Sloot P. HIV reservoirs and immune surveillance evasion cause the failure of structured treatment interruptions: A computational study. PLoS ONE. 2012. Vol. 7. No. 4. pp. e36108.
Sloot P., Boukhanovsky A.V. Young Russian researchers take up challenges in the computational sciences. Journal of Computational Science. 2012. Vol. 3. No. 6. pp. 439-440.
Sloot P., Quax R. Information processing as a paradigm to model and simulate complex systems. Journal of Computational Science. 2012. Vol. 3. No. 5. pp. 247-249.
Бухановский А.В., Житников А.Н., Петросян С.Г., Слоот П. Высокопроизводительные технологии экстренных вычислений для предотвращения угрозы наводнений. Известия высших учебных заведений. Приборостроение. 2011. Т. 54. № 10. С. 14-20.
Болгова Е.В., Иванов С.В., Гринина Е.А., Слоот П., Бухановский А.В. Параллельные алгоритмы моделирования динамических процессов на комплексных сетях. Известия высших учебных заведений. Приборостроение. 2011. Т. 54. № 10. С. 72-79.
Altintas I., Anand M.K., Vuong T.N., Bowers S., Ludascher B., Sloot P.M. A data model for analyzing user collaborations in workflow-driven e-science. International Journal of Computers and their Applications. 2011. Vol. 18. No. 3. pp. 160-179.
Naumov L.A., Hoekstra A.G., Sloot P.M. Cellular automata models of tumour natural shrinkage. Physica A: Statistical Mechanics and its Applications. 2011. Vol. 390. No. 12. pp. 2283-2290.
Иванов С.В., Болгова Е.В., Каширин В.В., Якушев А.В., Чугунов А.В., Бухановский А.В., Слоот П. Веб-ориентированный центр в области социодинамики: концепция и принципиальная архитектура. Интернет и современное общество (IMS-2011): Труды XIV Всероссийской объединенной конференции. 2011. С. 75-80.
Mei S., Quax R., Van De Vijver D., Zhu Y., Sloot P.M. Increasing risk behaviour can outweigh the benefits of antiretroviral drug treatment on the HIV incidence among men-having-sex-with-men in Amsterdam. BMC Infectious Diseases. 2011. Vol. 11. pp. 18.