Лобода Александр Александрович

Статья

Artomov M., Loboda A.A., Artyomov M.N., Daly M.J. Public platform with 39,472 exome control samples enables association studies without genotype sharing. Nature Genetics. 2024. Vol. 56. No. 2. pp. 327-335.

Статья

Usoltsev D., Kolosov N., Rotar O., Loboda A., Boyarinova M., Moguchaya E., Kolesova E., Erina A., Tolkunova K., Rezapova V., Molotkov I., Melnik O., Freylikhman O., Paskar N., Alieva A., Baranova E., Bazhenova E., Beliaeva O., Vasilyeva E., Kibkalo S., Skitchenko R., Babenko A., Sergushichev A., Dushina A., Lopina E., Basyrova I., Libis R., Duplyakov D., Cherepanova N., Donner K., Laiho P., Kostareva A., Konradi A., Shlyakhto E., Palotie A., Daly M.J., Artomov M. Complex trait susceptibilities and population diversity in a sample of 4,145 Russians. Nature Communications. 2024. Vol. 15. No. 1. pp. 6212.

Статья

Skitchenko R., Smirnov S., Krapivin M., Smirnova A., Artomov M., Loboda A., Dinikina Y. Case report: A case study of variant calling pipeline selection effect on the molecular diagnostics outcome. Frontiers in Oncology. 2024. Vol. 14. pp. 1422811.

Статья

Atkinson E., Artomov M., Loboda A.A., Rehm H., Macarthur D., Karczewski K.J., Neale B.M., Daly M.J. Discordant calls across genotype discovery approaches elucidate variants with systematic errors. Genome Research. 2023. Vol. 33. No. 6. pp. 999-1005.

Статья

Pinakhina D., Loboda A., Sergushichev A., Artomov M. Gene, cell type, and drug prioritization analysis suggest genetic basis for the utility of diuretics in treating Alzheimer disease. Human Genetics and Genomics Advances. 2023. Vol. 4. No. 3. pp. 100203.

Тезисы

A platform for case-control matching enables association studies without genotype sharing

Статья

Emelianova M., Gainullina A., Poperechnyi N., Loboda A.A., Artyomov M., Sergushichev A. Shiny GATOM: omics-based identification of regulated metabolic modules in atom transition networks. Nucleic Acids Research. 2022. Vol. 50. No. 1. pp. W690-W696.

Статья

Kolosov N., Rezapova V., Rotar O., Loboda A., Freylikhman O., Melnik O., Sergushichev A., Stevens C., Voortman T., Kostareva A., Konradi A., Daly M., Artomov M. Genotype imputation and polygenic score estimation in northwestern Russian population. PLoS ONE. 2022. Vol. 17. No. 6. pp. e0269434.

Статья

Nehme R., Pietilainen O., Artomov M., Tegtmeyer M., Valakh V., Lehtonen L., Bell C., Singh T., Trehan A., Sherwood J., Manning D., Peirent E., Malik R., Guss E., Hawes D., Beccard A., Bara A., Hazelbaker D., Zuccaro E., Genovese G., Loboda A.A., Neumann A., Lilliehook C., Kuismin O., Hamalainen E., Kurki M., Hultman C., Kahler A., Paulo J., Ganna A., Madison J., Cohen B., Mcphie D., Adolfsson R., Perlis R., Dolmetsch R., Farhi S., Mccarroll S., Hyman S., Neale B., Barrett L., Harper W., Palotie A., Daly M., Eggan K. The 22q11.2 region regulates presynaptic gene-products linked to schizophrenia. Nature Communications. 2022. Vol. 13. No. 1. pp. 3690.

Тезисы

Polygenic Risk Score Estimation in North-Western Russian Population

Статья

Лобода А.А., Сергушичев А.А. Вывод генных регуляторных сетей по данным экспрессии генов при помощи байесовских сетей [Inferring of regulatory networks from expression data using bayesian networks]. Научно-технический вестник информационных технологий, механики и оптики [Scientific and Technical Journal of Information Technologies, Mechanics and Optics]. 2020. Т. 20. № 6(130). С. 835-840.

Тезисы

Public platform with 42,291 exome control samples enables association studies without genotype sharing (Abstract/Program #98). Presented at the 69th Annual Meeting of The American Society of Human Genetics, October 17, Houston.

Тезисы

Algorithm for gene regulatory network inference recovers biological insights from large-scale gene expression data (Abstract/Program #1426). Presented at the 69th Annual Meeting of The American Society of Human Genetics, October 18, Houston.

Статья

Artomov M., Loboda A.A., Artyomov M., Daly M. A platform for case-control matching enables association studies without genotype sharing. BioRxiv [база препринтов]. 2019. pp. 1-26.

Тезисы

Определение структуры генной регуляторной сети по профилям экспрессии генов

Статья

Isomurodov J.E., Loboda A.A., Sergushichev A.A. Ranking Vertices for Active Module Recovery Problem. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2017. Vol. 10252. pp. 75-84.

Статья

Ulland T.K., Song W., Huang S.C., Ulrich J.D., Sergushichev A.A., Beatty W.L., Loboda A.A., Zhou Y., Cairns N.J., Kambal A., Loginicheva E., Gilfillan S., Cella M., Virgin H.W., Unanue E.R., Wang Y., Artyomov M.N., Holtzman D.M., Colonna M. TREM2 Maintains Microglial Metabolic Fitness in Alzheimer's Disease. Cell. 2017. Vol. 170. No. 4. pp. 649-663.e13.

Статья

Loboda A.A., Artyomov M.N., Sergushichev A.A. Solving generalized maximum-weight connected subgraph problem for network enrichment analysis. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2016. Vol. 9838. pp. 210-221.

Статья

Sergushichev A.A., Loboda A.A., Jha A.K., Vincent E.E., Driggers E.M., Jones R.G., Pearce E.J., Artyomov M.N. GAM: a web-service for integrated transcriptional and metabolic network analysis. Nucleic Acids Research. 2016. Vol. 44. No. 1. pp. W194-W200.