Алексеев Никита Владимирович

Статья

Замятин А.А., Алексеев Н.В. Chromosome-level genome assembly, annotation, and phylogenomics of the gooseneck barnacle Pollicipes pollicipes. GigaScience. 2022. Vol. 11. No. giac021.

Статья

Zabelkin A., Yakovleva Y., Bochkareva O., Alexeev N. PaReBrick: PArallel REarrangements and BReaks identification toolkit. Bioinformatics. 2022. Vol. 38. No. 2. pp. 357-363.

Статья

Ivanov A., Avdeyev P., Alexeev N. Scaffolding Based on Hi-C Reads and Neural Networks. Институт биоинформатики. Сборник тезисов 2020/21. 2021. pp. 21.

Статья

Zamyatin A., Avdeyev P., Liang J., Sharma A., Chen C., Lukyanchikova V., Alexeev N., Tu Z., Alekseyev M.A., Sharakhov I.V. Chromosome-level genome assemblies of the malaria vectors Anopheles coluzzii and Anopheles arabiensis. GigaScience. 2021. Vol. 10. No. 3. pp. 1-16.

Статья

Seferbekova Z., Zabelkin A., Yakovleva Y., Afasizhev R., Dranenko N., Alexeev N., Gelfand M., Bochkareva O. High Rates of Genome Rearrangements and Pathogenicity of Shigella spp.. Frontiers in Microbiology. 2021. Vol. 12. pp. 628622.

Статья

Avdeyev P., Alexeev N.V., Rong Y., Alekseyev M.A. A unified ILP framework for core ancestral genome reconstruction problems. Bioinformatics. 2020. Vol. 36. No. 10. pp. 2993-3003.

Статья

Eliseev A., Gibson K., Avdeyev P., Novik D., Bendall M., Perez-Losada M., Alexeev N.V., Crandall K. Evaluation of haplotype callers for next-generation sequencing of viruses. Infection, Genetics and Evolution. 2020. Vol. 82. pp. 104277.

Статья

Alexeev N., Isomurodov J., Sukhov V., Korotkevich G., Sergushichev A. Markov chain Monte Carlo for active module identification problem. BMC Bioinformatics. 2020. Vol. 21. No. 6. pp. 261.

Статья

Aganezov S., Zban I., Aksenov V., Alexeev N.V., Schatz M.C. Recovering rearranged cancer chromosomes from karyotype graphs. BMC Bioinformatics. 2019. Vol. 20. pp. 641.

Статья

Zabelkin A., Alexeev N. Estimation of the true evolutionary distance under the INFER model. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2018. Vol. 11183. pp. 72-87.

Статья

Alexeev N., Isomurodov J.E., Korotkevich G., Sergushichev A. The Soft Vertex Classification for Active Module Identification Problem. BioRxiv. 2018. pp. 1-20.

Статья

Alexeev N.V., Alekseyev M.A. Combinatorial scoring of phylogenetic trees and networks based on homoplasy-free characters. Journal of Computational Biology. 2018. Vol. 25. No. 11. pp. 1203-1219.

Статья

Alekseev N.V., Tikhomirov A. Singular Values Distribution of Squares of Elliptic Random Matrices and Type B Narayana Polynomials. Journal of Theoretical Probability. 2017. Vol. 30. No. 3. pp. 1170–1190.

Статья

Alekseev N.V., Alekseyev M.A. Estimation of the True Evolutionary Distance under the Fragile Breakage Model. BMC Genomics. 2017. Vol. 18. No. 4. pp. 356.

Статья

Alekseev N.V., Pologova A., Alekseyev M. Generalized Hultman Numbers and Cycle Structures of Breakpoint Graphs. Journal of Computational Biology. 2017. Vol. 24. No. 2. pp. 93-105.

Статья

Avdeyev P., Alekseev N.V., Alekseyev M.A., Rong Y. A unified ILP framework for genome median, halving, and aliquoting problems under DCJ. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2017. Vol. 10562. pp. 156-178.

Статья

Alekseev N.V., Alekseyev M. Combinatorial Scoring of Phylogenetic Networks. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2016. Vol. 9797. pp. 560-572.

Статья

Alekseev N.V., Andersen J., Penner R., Zograf A.P. Enumeration of chord diagrams on many intervals and their non-orientable analogs. Advances in Mathematics. 2016. Vol. 289. pp. 1056-1081.

Статья

Alekseev N.V., Avdeyev P., Alekseyev M. Comparative Genomics Meets Topology: a Novel View on Genome Median and Halving Problems. BMC Bioinformatics. 2016. Vol. 17. No. 11. pp. 213-223.

Статья

Alexeev N., Pologova A., Alekseyev M. Generalized Hultman Numbers and the Distribution of Multi-break Distances. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2015. Vol. 9199. pp. 3-12.

Статья

Alexeev N., Aidagulov R., Alekseyev M.A. A computational method for the rate estimation of evolutionary transpositions. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2015. Vol. 9043. pp. 471-480.

Статья

Rozanov D., Cheltsov A., Sergienko E., Vasile S., Golubkov V., Aleshin A.E., Levin T., Traer E., Hann B., Freimuth J., Alexeev N., Alekseyev M., Budko S.P., Baechinger H.P., Spellman P. TRAIL-Based High Throughput Screening Reveals a Link between TRAIL-Mediated Apoptosis and Glutathione Reductase, a Key Component of Oxidative Stress Response. PLoS ONE. 2015. Vol. 10. No. 6. pp. e0129566.

Статья

Алексеев Н.В., Зограф П. Random matrix approach to the distribution of genomic distance. Journal of Computational Biology. 2014. Vol. 21. No. 8. pp. 68–87.

Статья

Алексеев Н.В., Tikhomirov A., Goetze F. On the asymptotic distribution of the singular values of powers of random matrices. Journal of Mathematical Sciences. 2014. Vol. 199. No. 2. pp. 68-87.

Статья

Алексеев Н.В. On almost sure convergence of the spectral distribution of a power of a random matrix to the Fuss-Catalan distribution. Journal of Mathematical Sciences. 2011. Vol. 176. No. 2. pp. 112-116.

Статья

Алексеев Н.В., Tikhomirov A., Goetze F. On the singular spectrum of powers and products of random matrices. Doklady mathematics. 2010. Vol. 82. No. 1. pp. 505-507.

Статья

Алексеев Н.В., Tikhomirov A., Goetze F. Asymptotic distribution of singular values of powers of random matrices. Lithuanian Mathematical Journal. 2010. Vol. 50. No. 2. pp. 121-132.